SingleStrandAlignment¶
pycyseq.SingleStrandAlignment
dataclass
¶
Alignment of a single-strand DNA molecule.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
aln
|
Alignment
|
Alignment object |
required |
has_rotations: bool
property
¶
Whether the DNA sequence has more than one possible rotation based on alignment.
is_duplicate: int
property
¶
Return true if the alignment has been marked as duplicate
len: int
property
¶
Number of aligned bases in the DNA sequence
mapq: int
property
¶
Mapping quality of the alignment.
name: str | None
property
¶
Name of the read
num_rotations: int
property
¶
The number of possible rotations.
pysam: pysam.AlignedSegment
property
¶
The pysam.AlignmentSegment object for access to its methods. See https://pysam.readthedocs.io/en/stable/index.html for documentation.